Question: Had Qui-Gon and Obi-Wan been able to both survive and defeat Maul, would this mean Sidious would not be able to manipulate Anakin anymore? Or would the Sith Lord have simply tried a different plan, besides emotional manipulation, to try to trick an Anakin trained under Qui-Gon into the dark side?
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Answer: I don't think his plans would change. Qui-Gon is just another Jedi Master training Anakin, nothing much different because Obi-Wan was trained by him as well, after all. Plus, Qui-Gon much more believes Anakin is the chosen one, so he would probably allow Anakin a lot more than Obi-Wan would, including his relationships with Palpatine and Padme, which both are more important for Anakin's switch to the dark side.
lionhead
I (not who submitted the question) wonder if Palpatine actually wanted Darth Maul to be killed by Obi-Wan, Qui-Gon, or both. It seems like he mostly trained Maul to fight. Maul seemed to know little about the plotting, scheming, and political dealings. Dooku was capable in those areas, and was skilled at fighting. He was probably more useful while Palpatine waited to turn Anakin.
Not sure about that. I think he genuinely thought Darth Maul was properly trained to defeat Jedi. I don't think Palpatine planned ahead in terms of apprentices, except Anakin. But Darth Maul was before he knew Anakin. I don't think Sith are easy to find either, so Palpatine needed Maul for a lot of things more than just kill Jedi. It is too convenient however that every apprentice he had served his plans perfectly. Because I don't see Maul lead the separatists.
lionhead
I was under the impression that Palpatine knew about Anakin ever since Shmi was chosen to be Anakin's mother. I might be wrong. This is an interesting discussion, though - I appreciate your response. Some think that Maul had limited use of the Force and was more of a trained assassin. But, if that were true, why call him a Sith apprentice? As you say, it's hard to imagine him being a Separatist leader.
I do not have any knowledge regarding any books written or other sources that might be considered canon, as have been mentioned in other comments here recently. My knowledge is purely the movies. As per the movies, Palpatine only learned of Anakin after the Battle of Naboo.
lionhead